PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G075600.1
Common NameB456_008G075600, LOC105763360
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 181aa    MW: 20884.3 Da    PI: 5.1353
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G075600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.8e-2080129255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp+    r +r++lg+f+tae Aa+a+++a+ +++g
  Gorai.008G075600.1  80 RYRGVRQRP-WGKWAAEIRDPK----RaARVWLGTFDTAEAAARAYDRAAIRFRG 129
                         8********.**********83....57************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.72E-2079139No hitNo description
PROSITE profilePS5103225.55480137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-3380138IPR001471AP2/ERF domain
PfamPF008474.3E-1480129IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-2380139IPR016177DNA-binding domain
SMARTSM003805.8E-3980143IPR001471AP2/ERF domain
PRINTSPR003673.0E-128192IPR001471AP2/ERF domain
PRINTSPR003673.0E-12103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MWVQFDSENT LYVMDNYNRN QSRALTLTRE QEYEIMVSTL LHVINGGQPA TSTNGFCFNS  60
LFPPIQPARV PLPTTTNRKR YRGVRQRPWG KWAAEIRDPK RAARVWLGTF DTAEAAARAY  120
DRAAIRFRGD KAKINFPLSD YEMQEEEEKQ SGEGESSNDN ENGWKIFSEE EFRELMMVDS  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A7e-2579138464ATERF1
2gcc_A7e-2579138464ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437035.11e-133PREDICTED: ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH541e-34EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A0D2T1R71e-133A0A0D2T1R7_G
STRINGPOPTR_0009s10470.12e-32(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1834549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.17e-26ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]